XmlmmCIF equivalent: refine_ls_shell
Data items in the REFINE_LS_SHELL category record details about
the results of least-squares refinement, broken out by shells of
resolution.
XmlmmCIF equivalent: refine_ls_shell/R_factor_R_free
Residual factor R for reflections that satisfy the resolution
limits established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the test (i.e., excluded from refinement) reflections when
refinement included calculation of a"free" R factor. Details
of how reflections were assigned to the working and test sets
are given in _reflns.R_free_details.
sum|F~obs~ - F~calc~|
R = ------------------------------------------------------------------
sum|F~obs~|
F~obs~ = the observed structure factor amplitudes
F~calc~ = the calculated structure factor amplitudes
sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/R_factor_R_free_error
The estimated error in _refine_ls_shell.R_factor_R_free.
The method used to estimate the error is described in the
item _refine.ls_R_factor_R_free_error_details.
XmlmmCIF equivalent: refine_ls_shell/R_factor_R_work
Residual factor R for reflections that satisfy the resolution
limits established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the working (i.e., included in refinement) reflections when
refinement included calculation of a"free" R factor. Details
of how reflections were assigned to the working and test sets
are given in _reflns.R_free_details.
sum|F~obs~ - F~calc~|
R = ----------------------------------------------------------------
sum|F~obs~|
F~obs~ = the observed structure factor amplitudes
F~calc~ = the calculated structure factor amplitudes
sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/R_factor_all
Residual factor R for reflections that satisfy the resolution
limits established by _refine_ls_shell.d_res_high and _refine_ls_shell.d_res_low.
sum|F~obs~ - F~calc~|
R = --------------------------------------------------------------------------
sum|F~obs~|
F~obs~ = the observed structure factor amplitudes
F~calc~ = the calculated structure factor amplitudes
sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/R_factor_obs
Residual factor R for reflections that satisfy the resolution
limits established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation criterion
established by _reflns.observed_criterion.
sum|F~obs~ - F~calc~|
R = -------------------------------------------------------------------------
sum|F~obs~|
F~obs~ = the observed structure factor amplitudes
F~calc~ = the calculated structure factor amplitudes
sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/number_reflns_R_free
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the test (i.e., excluded from refinement) reflections when
refinement included calculation of a"free" R factor. Details
of how reflections were assigned to the working and test sets
are given in _reflns.R_free_details.
XmlmmCIF equivalent: refine_ls_shell/number_reflns_R_work
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the working (i.e., included in refinement) reflections when
refinement included calculation of a"free" R factor. Details
of how reflections were assigned to the working and test sets
are given in _reflns.R_free_details.
XmlmmCIF equivalent: refine_ls_shell/number_reflns_all
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low.
XmlmmCIF equivalent: refine_ls_shell/number_reflns_obs
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation criterion
established by _reflns.observed_criterion.
XmlmmCIF equivalent: refine_ls_shell/pdbx_total_number_of_bins_used
Total number of bins used.
XmlmmCIF equivalent: refine_ls_shell/percent_reflns_R_free
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the test (i.e., excluded from refinement) reflections when
refinement included calculation of a"free" R factor,
expressed as a percentage of the number of geometrically
observable reflection that satisfy the reflection limits.
XmlmmCIF equivalent: refine_ls_shell/percent_reflns_obs
The number of reflections that satisfy the resolution limits
established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation criterion
established by _reflns.observed_criterion, expressed as a
percentage of the number of geometrically observable
reflections that satisfy the resolution limits.
XmlmmCIF equivalent: refine_ls_shell/redundancy_reflns_all
The ratio of the total number of observations of the reflections that
satisfy the resolution limits established by _refine_ls_shell.d_res_high
and _refine_ls_shell.d_res_low to the number of crystallographically
unique reflections that satisfy those same limits.
XmlmmCIF equivalent: refine_ls_shell/redundancy_reflns_obs
The ratio of the total number of observations of the reflections that
satisfy the resolution limits established by _refine_ls_shell.d_res_high
and _refine_ls_shell.d_res_low and the observation criterion established
by _reflns.observed_criterion to the number of crystallographically
unique reflections that satisfy those same limits.
XmlmmCIF equivalent: refine_ls_shell/wR_factor_R_free
Weighted residual factor wR for reflections that satisfy the
resolution limits established by _refine_ls_shell.d_res_high
and _refine_ls_shell.d_res_low and the observation limit
established by _reflns.observed_criterion, and that were used
as the test (i.e., excluded from refinement) reflections when
refinement included calculation of a"free" R factor. Details
of how reflections were assigned to the working and test sets
are given in _reflns.R_free_details.
( sum|w |Y~obs~ - Y~calc~|^2^| )^1/2^
wR = ( ------------------------------------------------------------- )
( sum|w Y~obs~^2^| )
Y~obs~ = the observed amplitude specified by _refine.ls_structure_factor_coef
Y~calc~ = the calculated amplitude specified by _refine.ls_structure_factor_coef
w = the least squares weight sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/wR_factor_R_work
Weighted residual factor wR for reflections that satisfy the resolution
limits established by _refine_ls_shell.d_res_high and
_refine_ls_shell.d_res_low and the observation limit established
by _reflns.observed_criterion, and that were used as the working
(i.e., included in refinement) reflections when refinement included
calculation of a "free" R factor. Details of how reflections were
assigned to the working and test sets are given in _reflns.R_free_details.
( sum|w |Y~obs~ - Y~calc~|^2^| )^1/2^
wR = (---------------------------- ---------------------------- )
( sum|w Y~obs~^2^| )
Y~obs~ = the observed amplitude specified by _refine.ls_structure_factor_coef
Y~calc~ = the calculated amplitude specified by _refine.ls_structure_factor_coef
w = the least squares weight sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/wR_factor_all
Weighted residual factor wR for reflections that satisfy the
resolution limits established by _refine_ls_shell.d_res_high
and _refine_ls_shell.d_res_low.
( sum|w |Y~obs~ - Y~calc~|^2^| )^1/2^
wR = ( --------------------------------------------------------------- )
( sum|w Y~obs~^2^| )
Y~obs~ = the observed amplitude specified by _refine.ls_structure_factor_coef
Y~calc~ = the calculated amplitude specified by _refine.ls_structure_factor_coef
w = the least squares weight
sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/wR_factor_obs
Weighted residual factor wR for reflections that satisfy the
resolution limits established by _refine_ls_shell.d_res_high
and _refine_ls_shell.d_res_low and the observation criterion
established by _reflns.observed_criterion.
( sum|w |Y~obs~ - Y~calc~|^2^| )^1/2^
wR = ( -------------------------------------------------------------- )
( sum|w Y~obs~^2^| )
Y~obs~ = the observed amplitude specified by _refine.ls_structure_factor_coef
Y~calc~ = the calculated amplitude specified by _refine.ls_structure_factor_coef
w = the least squares weight
sum is taken over the specified reflections
XmlmmCIF equivalent: refine_ls_shell/d_res_low
The lowest resolution for the interplanar spacing in the
reflection data in this shell. This is the smallest d value.
XmlmmCIF equivalent: refine_ls_shell/d_res_high
The highest resolution for the interplanar spacing in the
reflection data in this shell. This is the largest d value.